% =========================================================================
% References for "Centisecond halo-model predictions in LCDM and beyond"
% Auto-populated via valency-mcp; manual entries for the few items
% not on arxiv / crossref.
% =========================================================================

% ---- Halo model / HMF / bias --------------------------------------------

@article{Seljak2000,
  title  = {Analytic model for galaxy and dark matter clustering},
  author = {Seljak, U.},
  year   = {2000}, month=Oct,
  volume = {318}, number = {1}, pages = {203--213},
  journal= {MNRAS},
  doi    = {10.1046/j.1365-8711.2000.03715.x},
  eprint = {astro-ph/0001493},
}

@article{PeacockSmith2000,
  title  = {Halo occupation numbers and galaxy bias},
  author = {Peacock, J. A. and Smith, R. E.},
  year   = {2000},
  journal= {MNRAS}, volume={318}, pages={1144},
  doi    = {10.1046/j.1365-8711.2000.03779.x},
  eprint = {astro-ph/0005010},
}

@article{CoorayShet2002,
  title   = {Halo models of large scale structure},
  author  = {Cooray, A. and Sheth, R.},
  year    = {2002},
  journal = {Physics Reports}, volume={372}, number={1}, pages={1--129},
  doi     = {10.1016/S0370-1573(02)00276-4},
  eprint  = {astro-ph/0206508},
}

@article{Tinker2008,
  title   = {Toward a halo mass function for precision cosmology: the limits of universality},
  author  = {Tinker, J. L. and Kravtsov, A. V. and Klypin, A. and Abazajian, K. and Warren, M. S. and Yepes, G. and Gottl{\"o}ber, S. and Holz, D. E.},
  year    = {2008},
  journal = {ApJ}, volume={688}, pages={709--728},
  doi     = {10.1086/591439},
  eprint  = {0803.2706},
}

@article{Tinker2010,
  title   = {The large scale bias of dark matter halos: numerical calibration and model tests},
  author  = {Tinker, J. L. and Robertson, B. E. and Kravtsov, A. V. and Klypin, A. and Warren, M. S. and Yepes, G. and Gottl{\"o}ber, S.},
  year    = {2010},
  journal = {ApJ}, volume={724}, number={2}, pages={878},
  doi     = {10.1088/0004-637X/724/2/878},
  eprint  = {1001.3162},
}

% ---- GNFW / pressure profiles -------------------------------------------

@article{Arnaud2010,
  title   = {The universal galaxy cluster pressure profile from a representative sample of nearby systems (REXCESS) and the $Y_{\mathrm{SZ}}$--$M_{500}$ relation},
  author  = {Arnaud, M. and Pratt, G. W. and Piffaretti, R. and B{\"o}hringer, H. and Croston, J. H. and Pointecouteau, E.},
  year    = {2010}, month=Jul,
  journal = {A\&A}, volume={517}, pages={A92},
  doi     = {10.1051/0004-6361/200913416},
  eprint  = {0910.1234},
}

@article{Battaglia2012,
  title   = {On the cluster physics of Sunyaev--Zel'dovich surveys II: deconstructing the thermal SZ power spectrum},
  author  = {Battaglia, N. and Bond, J. R. and Pfrommer, C. and Sievers, J. L.},
  year    = {2012},
  journal = {ApJ}, volume={758}, number={2}, pages={75},
  doi     = {10.1088/0004-637X/758/2/75},
  eprint  = {1109.3711},
}

% ---- tSZ Cl^yy theory + class_sz ----------------------------------------

@article{Bolliet2018,
  title   = {Dark energy constraints from the thermal Sunyaev--Zeldovich power spectrum},
  author  = {Bolliet, B. and Comis, B. and Komatsu, E. and Mac{\'i}as-P{\'e}rez, J. F.},
  year    = {2018}, month=Mar,
  journal = {MNRAS}, volume={477}, number={4}, pages={4957--4967},
  doi     = {10.1093/mnras/sty823},
  eprint  = {1712.00788},
}

@article{Dolag2016,
  title   = {{SZ} effects in the Magneticum Pathfinder simulation: comparison with the {P}lanck, {SPT}, and {ACT} results},
  author  = {Dolag, K. and Komatsu, E. and Sunyaev, R.},
  year    = {2016}, month=Aug,
  journal = {MNRAS}, volume={463}, number={2}, pages={1797--1811},
  doi     = {10.1093/mnras/stw2035},
}

@misc{ClassSzII,
  title  = {{CLASS\_SZ II}: notes and examples of fast and accurate calculations of halo-model, large-scale-structure and CMB observables},
  author = {Bolliet, B. and Kusiak, A. and McCarthy, F. and Sabyr, A. and Surrao, K. and Chluba, J. and Embil Villagra, C. and Ferraro, S. and others},
  year   = {2025},
  eprint = {2507.07346},
  archivePrefix = {arXiv}, primaryClass = {astro-ph.CO},
}

% ---- Emulators / CosmoPower ---------------------------------------------

@article{SpurioMancini2022,
  title   = {{CosmoPower}: emulating cosmological power spectra for accelerated Bayesian inference from next-generation surveys},
  author  = {Spurio Mancini, A. and Piras, D. and Alsing, J. and Joachimi, B. and Hobson, M. P.},
  year    = {2022}, month=Jan,
  journal = {MNRAS}, volume={511}, number={2}, pages={1771--1788},
  doi     = {10.1093/mnras/stac064},
  eprint  = {2106.03846},
}

@misc{Bolliet2024,
  title   = {High-accuracy emulators for observables in $\Lambda$CDM, $N_{\rm eff}$, $\Sigma m_\nu$, and $w$ cosmologies},
  author  = {Bolliet, B. and Spurio Mancini, A. and Hill, J. C. and Madhavacheril, M. and Jense, H. T. and Calabrese, E. and Dunkley, J.},
  year    = {2023},
  eprint  = {2303.01591},
  archivePrefix = {arXiv}, primaryClass = {astro-ph.CO},
}

% (Bolliet et al.\ 2023 is also the reference for the CAMB-vs-CLASS
% emulator comparison cited elsewhere as ``Jense+24''; the comparison
% appears in that paper.)
@misc{Jense2024,
  title   = {High-accuracy emulators for observables in $\Lambda$CDM, $N_{\rm eff}$, $\Sigma m_\nu$, and $w$ cosmologies},
  author  = {Bolliet, B. and Spurio Mancini, A. and Hill, J. C. and Madhavacheril, M. and Jense, H. T. and Calabrese, E. and Dunkley, J.},
  year    = {2023},
  eprint  = {2303.01591},
  archivePrefix = {arXiv}, primaryClass = {astro-ph.CO},
}

% ---- FFTLog / mcfit -----------------------------------------------------

@article{Hamilton2000,
  title   = {Uncorrelated modes of the non-linear power spectrum},
  author  = {Hamilton, A. J. S.},
  year    = {2000},
  journal = {MNRAS}, volume={312}, pages={257--284},
  doi     = {10.1046/j.1365-8711.2000.03071.x},
  eprint  = {astro-ph/9905191},
}

@article{Talman1978,
  title   = {Numerical Fourier and Bessel transforms in logarithmic variables},
  author  = {Talman, J. D.},
  year    = {1978},
  journal = {J. Comput. Phys.}, volume={29}, pages={35--48},
  doi     = {10.1016/0021-9991(78)90107-9},
}

@misc{mcfit,
  title  = {{mcfit}: multiplicatively convolutional fast integral transforms},
  author = {Li, Yin},
  year   = {2019},
  howpublished = {\url{https://github.com/eelregit/mcfit}},
}

% ---- JAX / NumPyro / Pyro / optimisers ----------------------------------

@misc{Bradbury2018,
  title  = {{JAX}: composable transformations of {P}ython+{N}um{P}y programs},
  author = {Bradbury, J. and Frostig, R. and Hawkins, P. and Johnson, M. J. and Leary, C. and Maclaurin, D. and Necula, G. and Paszke, A. and Vander{P}las, J. and Wanderman-{M}ilne, S. and Zhang, Q.},
  year   = {2018},
  howpublished = {\url{http://github.com/google/jax}},
}

@misc{Phan2019,
  title  = {Composable effects for flexible and accelerated probabilistic programming in {NumPyro}},
  author = {Phan, D. and Pradhan, N. and Jankowiak, M.},
  year   = {2019},
  eprint = {1912.11554},
  archivePrefix = {arXiv}, primaryClass = {stat.ML},
}

@misc{Bingham2019,
  title  = {{P}yro: Deep universal probabilistic programming},
  author = {Bingham, E. and Chen, J. P. and Jankowiak, M. and Obermeyer, F. and Pradhan, N. and Karaletsos, T. and Singh, R. and Szerlip, P. and Horsfall, P. and Goodman, N. D.},
  year   = {2018},
  eprint = {1810.09538},
  archivePrefix = {arXiv}, primaryClass = {cs.LG},
}

@article{HoffmanGelman2014,
  title   = {The no-{U}-turn sampler: adaptively setting path lengths in {H}amiltonian {M}onte {C}arlo},
  author  = {Hoffman, M. D. and Gelman, A.},
  year    = {2014},
  journal = {J. Mach. Learn. Res.}, volume={15}, pages={1593--1623},
}

@misc{optax,
  title  = {Optax: composable gradient transformation and optimisation, in {JAX}!},
  author = {DeepMind and Babuschkin, I. and Baumli, K. and Bell, A. and Bhupatiraju, S. and others},
  year   = {2020},
  howpublished = {\url{https://github.com/deepmind/optax}},
}

@misc{optimistix,
  title  = {{O}ptimistix: nonlinear solvers, optimisers and root-finders in {JAX}},
  author = {Rader, J. and Lyons, T. and Kidger, P.},
  year   = {2024},
  howpublished = {\url{https://github.com/patrick-kidger/optimistix}},
}

@article{scipy_optimize,
  title   = {{SciPy} 1.0: fundamental algorithms for scientific computing in {Python}},
  author  = {Virtanen, P. and others},
  year    = {2020},
  journal = {Nature Methods}, volume={17}, pages={261--272},
  doi     = {10.1038/s41592-019-0686-2},
}

% ---- Cobaya -------------------------------------------------------------

@article{Cobaya2021,
  title   = {{Cobaya}: code for {B}ayesian analysis of hierarchical physical models},
  author  = {Torrado, J. and Lewis, A.},
  year    = {2021}, month=May,
  journal = {JCAP}, volume={2021}, number={05}, pages={057},
  doi     = {10.1088/1475-7516/2021/05/057},
  eprint  = {2005.05290},
}

% ---- Simulation-based inference -----------------------------------------

@article{Cranmer2020,
  title   = {The frontier of simulation-based inference},
  author  = {Cranmer, K. and Brehmer, J. and Louppe, G.},
  year    = {2020}, month=May,
  journal = {PNAS}, volume={117}, number={48}, pages={30055--30062},
  doi     = {10.1073/pnas.1912789117},
  eprint  = {1911.01429},
}

@misc{Papamakarios2019,
  title  = {Sequential neural likelihood: fast likelihood-free inference with autoregressive flows},
  author = {Papamakarios, G. and Sterratt, D. C. and Murray, I.},
  year   = {2019},
  eprint = {1805.07226},
  archivePrefix = {arXiv}, primaryClass = {stat.ML},
}

@misc{Papamakarios2017MAF,
  title  = {Masked autoregressive flow for density estimation},
  author = {Papamakarios, G. and Pavlakou, T. and Murray, I.},
  year   = {2018},
  eprint = {1705.07057},
  archivePrefix = {arXiv}, primaryClass = {stat.ML},
}

@misc{Durkan2019NSF,
  title  = {Neural spline flows},
  author = {Durkan, C. and Bekasov, A. and Murray, I. and Papamakarios, G.},
  year   = {2019},
  eprint = {1906.04032},
  archivePrefix = {arXiv}, primaryClass = {stat.ML},
}

@misc{Hermans2020NRE,
  title  = {Likelihood-free {M}{C}{M}{C} with amortized approximate ratio estimators},
  author = {Hermans, J. and Begy, V. and Louppe, G.},
  year   = {2020},
  eprint = {1903.04057},
  archivePrefix = {arXiv}, primaryClass = {stat.ML},
}

@misc{Miller2020SREARS,
  title  = {Truncated marginal neural ratio estimation},
  author = {Miller, B. K. and Cole, A. and Forr{\'e}, P. and Louppe, G. and Weniger, C.},
  year   = {2021},
  eprint = {2107.01214},
  archivePrefix = {arXiv}, primaryClass = {stat.ML},
}

@misc{Sharrock2024score,
  title  = {Sequential neural score estimation: likelihood-free inference with conditional score based diffusion models},
  author = {Sharrock, L. and Simons, J. and Liu, S. and Beaumont, M.},
  year   = {2022},
  eprint = {2210.04872},
  archivePrefix = {arXiv}, primaryClass = {stat.ML},
}

@misc{Ward2024flowjax,
  title  = {{flowjax}: distributions, bijections and normalising flows using {Equinox} and {JAX}},
  author = {Ward, D.},
  year   = {2024},
  howpublished = {\url{https://github.com/danielward27/flowjax}},
}

% ---- Surveys ------------------------------------------------------------

@article{ACTDR6,
  title   = {{T}he {A}tacama {C}osmology {T}elescope {DR}6: lensing maps and likelihood},
  author  = {{ACT Collaboration}},
  year    = {2024},
  journal = {in prep.},
}

@misc{ACTDR62025,
  title  = {The {A}tacama {C}osmology {T}elescope: {DR}6 constraints on extended cosmological models},
  author = {Calabrese, E. and Hill, J. C. and Jense, H. T. and {ACT Collaboration}},
  year   = {2025},
  eprint = {2503.14454},
  archivePrefix = {arXiv}, primaryClass = {astro-ph.CO},
}

@misc{Poulin2025,
  title  = {Impact of {ACT} {DR}6 and {DESI} {DR}2 for early dark energy and the {H}ubble tension},
  author = {Poulin, V. and Smith, T. L. and Calder{\'o}n, R. and Simon, T.},
  year   = {2025},
  eprint = {2505.08051},
  archivePrefix = {arXiv}, primaryClass = {astro-ph.CO},
}

@article{SO2019,
  title   = {{T}he {S}imons {O}bservatory: science goals and forecasts},
  author  = {{The Simons Observatory Collaboration} and Ade, P. and Aguirre, J. and Ahmed, Z. and others},
  year    = {2019}, month=Feb,
  journal = {JCAP}, volume={2019}, number={02}, pages={056--056},
  doi     = {10.1088/1475-7516/2019/02/056},
  eprint  = {1808.07445},
}

@misc{CMBS4,
  title  = {{CMB-S4} science book, first edition},
  author = {Abazajian, K. N. and {CMB-S4 Collaboration}},
  year   = {2016},
  eprint = {1610.02743},
  archivePrefix = {arXiv}, primaryClass = {astro-ph.CO},
}

@article{DESI2024,
  title   = {{DESI} 2024 {VI}: cosmological constraints from the measurements of baryon acoustic oscillations},
  author  = {Adame, A. G. and {DESI Collaboration}},
  year    = {2024},
  journal = {JCAP}, volume={2025}, number={02}, pages={021},
  doi     = {10.1088/1475-7516/2025/02/021},
  eprint  = {2404.03002},
}

@misc{LSST,
  title  = {{LSST} science book, version 2.0},
  author = {{LSST Science Collaborations}},
  year   = {2009},
  eprint = {0912.0201},
  archivePrefix = {arXiv}, primaryClass = {astro-ph.IM},
}

% ---- Simulations --------------------------------------------------------

@article{Schaye2023Flamingo,
  title   = {The {FLAMINGO} project: cosmological hydrodynamical simulations for large-scale structure and galaxy cluster surveys},
  author  = {Schaye, J. and Kugel, R. and Schaller, M. and Helly, J. C. and Braspenning, J. and Elbers, W. and McCarthy, I. G. and others},
  year    = {2023}, month=Aug,
  journal = {MNRAS}, volume={526}, number={4}, pages={4978--5020},
  doi     = {10.1093/mnras/stad2419},
  eprint  = {2306.04024},
}

% ---- HMC / NUTS scaling + diagnostics -----------------------------------

@misc{Betancourt2017,
  title   = {A conceptual introduction to {Hamiltonian Monte Carlo}},
  author  = {Betancourt, M.},
  year    = {2017},
  eprint  = {1701.02434},
  archivePrefix = {arXiv}, primaryClass = {stat.ME},
}

@article{RobertsRosenthal2001,
  title   = {Optimal scaling for various {Metropolis-Hastings} algorithms},
  author  = {Roberts, G. O. and Rosenthal, J. S.},
  year    = {2001},
  journal = {Statistical Science}, volume={16}, number={4}, pages={351--367},
  doi     = {10.1214/ss/1015346320},
}

@article{BeskosEtAl2013,
  title   = {Optimal tuning of the hybrid {Monte Carlo} algorithm},
  author  = {Beskos, A. and Pillai, N. S. and Roberts, G. O. and Sanz-Serna, J. M. and Stuart, A. M.},
  year    = {2013},
  journal = {Bernoulli}, volume={19}, number={5A}, pages={1501--1534},
  doi     = {10.3150/12-BEJ414},
}

@misc{KingmaBa2014,
  title   = {Adam: A method for stochastic optimization},
  author  = {Kingma, D. P. and Ba, J.},
  year    = {2014},
  eprint  = {1412.6980},
  archivePrefix = {arXiv}, primaryClass = {cs.LG},
}